J3_9SS4_014
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 9SS4|1|D2|U|2334, 9SS4|1|D2|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SS4|1|D2|C|2295
9SS4|1|D2|U|2296
9SS4|1|D2|A|2297
9SS4|1|D2|A|2298
9SS4|1|D2|U|2299
*
9SS4|1|D2|A|2317
9SS4|1|D2|G|2318
9SS4|1|D2|G|2319
9SS4|1|D2|U|2320
9SS4|1|D2|U|2321
9SS4|1|D2|A|2322
9SS4|1|D2|G|2323
*
9SS4|1|D2|C|2332
9SS4|1|D2|A|2333
9SS4|1|D2|U|2334
9SS4|1|D2|A|2335
9SS4|1|D2|A|2336
9SS4|1|D2|G|2337
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B0
- Large ribosomal subunit protein bL27
- Chain BE
- Large ribosomal subunit protein uL5
- Chain BR
- Large ribosomal subunit protein uL18
- Chain D3
- 5S ribosomal RNA; 5S rRNA
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