J3_9SS5_005

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9SS5|1|D2|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS5_005 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.061

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9SS5|1|D2|G|297
9SS5|1|D2|G|298
9SS5|1|D2|A|299
9SS5|1|D2|A|300
9SS5|1|D2|G|301
*
9SS5|1|D2|C|316
9SS5|1|D2|G|317
9SS5|1|D2|C|318
9SS5|1|D2|G|319
9SS5|1|D2|A|320
9SS5|1|D2|U|321
9SS5|1|D2|A|322
9SS5|1|D2|C|323
9SS5|1|D2|A|324
9SS5|1|D2|G|325
*
9SS5|1|D2|C|337
9SS5|1|D2|G|338
9SS5|1|D2|U|339
9SS5|1|D2|A|340
9SS5|1|D2|C|341

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BG

Small ribosomal subunit protein bS20

Chain BX

Large ribosomal subunit protein uL24