J3_9SS5_008

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS5_008 not in the Motif Atlas

Homologous match to J3_1MMS_002

Geometric discrepancy: 0.2158

The information below is about J3_1MMS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

9SS5|1|D2|G|1055
9SS5|1|D2|G|1056
9SS5|1|D2|A|1057
*
9SS5|1|D2|U|1081
9SS5|1|D2|U|1082
9SS5|1|D2|U|1083
9SS5|1|D2|A|1084
9SS5|1|D2|A|1085
9SS5|1|D2|A|1086
9SS5|1|D2|G|1087
*
9SS5|1|D2|C|1102
9SS5|1|D2|A|1103
9SS5|1|D2|C|1104

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B9

Large ribosomal subunit protein bL36A

Chain BK

50S ribosomal protein L11