J3_9SS6_004
3D structure
- PDB id
- 9SS6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from RimM-KO
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 9SS6|1|D1|U|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SS6_004 not in the Motif Atlas
- Homologous match to J3_6CZR_077
- Geometric discrepancy: 0.165
- The information below is about J3_6CZR_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.3
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9SS6|1|D1|C|586
9SS6|1|D1|G|587
9SS6|1|D1|G|588
*
9SS6|1|D1|C|651
9SS6|1|D1|U|652
9SS6|1|D1|U|653
9SS6|1|D1|G|654
9SS6|1|D1|A|655
*
9SS6|1|D1|U|751
9SS6|1|D1|G|752
9SS6|1|D1|A|753
9SS6|1|D1|C|754
9SS6|1|D1|G|755
Current chains
- Chain D1
- 16S Ribosomal RNA
Nearby chains
- Chain AG
- Small ribosomal subunit protein uS8
- Chain AK
- Small ribosomal subunit protein uS12
- Chain AN
- Small ribosomal subunit protein uS15
- Chain AP
- Small ribosomal subunit protein uS17
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