J3_9SS6_009
3D structure
- PDB id
- 9SS6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from RimM-KO
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9SS6|1|D1|A|975, 9SS6|1|D1|G|976, 9SS6|1|D1|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SS6_009 not in the Motif Atlas
- Geometric match to J3_8B0X_007
- Geometric discrepancy: 0.1209
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9SS6|1|D1|U|955
9SS6|1|D1|U|956
9SS6|1|D1|U|957
9SS6|1|D1|A|958
9SS6|1|D1|A|959
9SS6|1|D1|U|960
9SS6|1|D1|U|961
9SS6|1|D1|C|962
*
9SS6|1|D1|G|973
9SS6|1|D1|A|974
9SS6|1|D1|A|975
9SS6|1|D1|G|976
9SS6|1|D1|A|977
9SS6|1|D1|A|978
9SS6|1|D1|C|979
9SS6|1|D1|C|980
9SS6|1|D1|U|981
9SS6|1|D1|U|982
9SS6|1|D1|A|983
9SS6|1|D1|C|984
*
9SS6|1|D1|G|1221
9SS6|1|D1|G|1222
9SS6|1|D1|C|1223
9SS6|1|D1|U|1224
9SS6|1|D1|A|1225
Current chains
- Chain D1
- 16S Ribosomal RNA
Nearby chains
- Chain AI
- Small ribosomal subunit protein uS10
- Chain AL
- Small ribosomal subunit protein uS13
- Chain AM
- Small ribosomal subunit protein uS14
- Chain AR
- Small ribosomal subunit protein uS19
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