J3_9SS6_014

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS6_014 not in the Motif Atlas

Homologous match to J3_6CZR_079

Geometric discrepancy: 0.153

The information below is about J3_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89145.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9SS6|1|D1|U|1073
9SS6|1|D1|G|1074
*
9SS6|1|D1|U|1083
9SS6|1|D1|G|1084
9SS6|1|D1|U|1085
9SS6|1|D1|U|1086
*
9SS6|1|D1|G|1099
9SS6|1|D1|C|1100
9SS6|1|D1|A|1101
9SS6|1|D1|A|1102

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AA

Small ribosomal subunit protein uS2

Chain AD

Small ribosomal subunit protein uS5

Chain AT

Small ribosomal subunit protein bS21