J3_9SS6_018

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS6_018 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.0709

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9SS6|1|D2|G|30
9SS6|1|D2|C|31
*
9SS6|1|D2|G|474
9SS6|1|D2|C|475
9SS6|1|D2|G|476
9SS6|1|D2|A|477
9SS6|1|D2|A|478
9SS6|1|D2|A|479
9SS6|1|D2|A|480
9SS6|1|D2|G|481
*
9SS6|1|D2|C|509
9SS6|1|D2|C|510

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BT

Large ribosomal subunit protein bL20

Chain BX

Large ribosomal subunit protein uL24