J3_9SS6_022

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9SS6|1|D2|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS6_022 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0647

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9SS6|1|D2|G|297
9SS6|1|D2|G|298
9SS6|1|D2|A|299
9SS6|1|D2|A|300
9SS6|1|D2|G|301
*
9SS6|1|D2|C|316
9SS6|1|D2|G|317
9SS6|1|D2|C|318
9SS6|1|D2|G|319
9SS6|1|D2|A|320
9SS6|1|D2|U|321
9SS6|1|D2|A|322
9SS6|1|D2|C|323
9SS6|1|D2|A|324
9SS6|1|D2|G|325
*
9SS6|1|D2|C|337
9SS6|1|D2|G|338
9SS6|1|D2|U|339
9SS6|1|D2|A|340
9SS6|1|D2|C|341

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BG

Small ribosomal subunit protein bS20

Chain BX

Large ribosomal subunit protein uL24