J3_9SS6_024

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS6_024 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1036

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9SS6|1|D2|C|698
9SS6|1|D2|A|699
9SS6|1|D2|G|700
*
9SS6|1|D2|C|732
9SS6|1|D2|G|733
9SS6|1|D2|A|734
9SS6|1|D2|A|735
9SS6|1|D2|C|736
*
9SS6|1|D2|G|760
9SS6|1|D2|A|761
9SS6|1|D2|U|762
9SS6|1|D2|G|763

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2