J3_9SUM_001
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CAACUUUGGAA*UAGUCUGGAG*CGACG
- Length
- 26 nucleotides
- Bulged bases
- 9SUM|1|A|U|115, 9SUM|1|A|G|118, 9SUM|1|A|G|119, 9SUM|1|A|G|145
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69230.4
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9SUM|1|A|C|111
9SUM|1|A|A|112
9SUM|1|A|A|113
9SUM|1|A|C|114
9SUM|1|A|U|115
9SUM|1|A|U|116
9SUM|1|A|U|117
9SUM|1|A|G|118
9SUM|1|A|G|119
9SUM|1|A|A|120
9SUM|1|A|A|121
*
9SUM|1|A|U|138
9SUM|1|A|A|139
9SUM|1|A|G|140
9SUM|1|A|U|141
9SUM|1|A|C|142
9SUM|1|A|U|143
9SUM|1|A|G|144
9SUM|1|A|G|145
9SUM|1|A|A|146
9SUM|1|A|G|147
*
9SUM|1|A|C|253
9SUM|1|A|G|254
9SUM|1|A|A|255
9SUM|1|A|C|256
9SUM|1|A|G|257
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain J
- 60S ribosomal protein L8
- Chain N
- 60S ribosomal protein L13
- Chain P
- Ribosomal protein L15
- Chain j
- 60S ribosomal protein L35
- Chain k
- 60S ribosomal protein L36
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