J3_9SUM_003
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 9SUM|1|A|U|333, 9SUM|1|A|A|341, 9SUM|1|C|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.4
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 12
Unit IDs
9SUM|1|A|C|330
9SUM|1|A|G|331
9SUM|1|A|A|332
9SUM|1|A|U|333
9SUM|1|A|A|334
9SUM|1|A|G|335
9SUM|1|A|C|336
9SUM|1|A|G|337
9SUM|1|A|A|338
9SUM|1|A|A|339
9SUM|1|A|C|340
9SUM|1|A|A|341
9SUM|1|A|A|342
9SUM|1|A|G|343
9SUM|1|A|U|344
9SUM|1|A|A|345
9SUM|1|A|C|346
*
9SUM|1|A|G|353
9SUM|1|A|G|354
9SUM|1|A|A|355
9SUM|1|A|A|356
9SUM|1|A|A|357
9SUM|1|A|G|358
*
9SUM|1|C|C|21
9SUM|1|C|U|22
9SUM|1|C|U|23
9SUM|1|C|G|24
Current chains
- Chain A
- 25S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain a
- Ribosomal protein L24
- Chain l
- Ribosomal protein L37
- Chain n
- Large ribosomal subunit protein eL39
Coloring options: