J3_9SUM_005
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- AUGAAAAGCAC*GAGUGAAACAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 9SUM|1|A|C|388, 9SUM|1|A|A|392
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.4
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9SUM|1|A|A|359
9SUM|1|A|U|360
9SUM|1|A|G|361
9SUM|1|A|A|362
9SUM|1|A|A|363
9SUM|1|A|A|364
9SUM|1|A|A|365
9SUM|1|A|G|366
9SUM|1|A|C|367
9SUM|1|A|A|368
9SUM|1|A|C|369
*
9SUM|1|A|G|380
9SUM|1|A|A|381
9SUM|1|A|G|382
9SUM|1|A|U|383
9SUM|1|A|G|384
9SUM|1|A|A|385
9SUM|1|A|A|386
9SUM|1|A|A|387
9SUM|1|A|C|388
9SUM|1|A|A|389
9SUM|1|A|G|390
9SUM|1|A|U|391
9SUM|1|A|A|392
9SUM|1|A|C|393
9SUM|1|A|G|394
*
9SUM|1|C|C|19
9SUM|1|C|U|20
Current chains
- Chain A
- 25S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain R
- 60S ribosomal protein L17-B
- Chain a
- Ribosomal protein L24
- Chain n
- Large ribosomal subunit protein eL39
Coloring options: