J3_9SUM_011

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

9SUM|1|A|A|1425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.4

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

6

Unit IDs

9SUM|1|A|U|1422
9SUM|1|A|G|1423
9SUM|1|A|A|1424
9SUM|1|A|A|1425
9SUM|1|A|G|1426
9SUM|1|A|U|1427
9SUM|1|A|G|1428
*
9SUM|1|A|C|1799
9SUM|1|A|A|1800
9SUM|1|A|A|1801
*
9SUM|1|A|U|1813
9SUM|1|A|C|1814
9SUM|1|A|U|1815
9SUM|1|A|A|1816

Current chains

Chain A

25S rRNA

Nearby chains

Chain T

Ribosomal protein L19

Chain i

60S ribosomal protein L34-B