J3_9SUM_013
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.4
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9SUM|1|A|U|1469
9SUM|1|A|C|1470
9SUM|1|A|G|1471
9SUM|1|A|A|1472
9SUM|1|A|U|1473
9SUM|1|A|C|1474
*
9SUM|1|A|G|1533
9SUM|1|A|G|1534
9SUM|1|A|A|1535
9SUM|1|A|A|1536
9SUM|1|A|U|1537
*
9SUM|1|A|A|1554
9SUM|1|A|A|1555
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Z
- Large ribosomal subunit protein uL23
- Chain i
- 60S ribosomal protein L34-B
- Chain m
- Large ribosomal subunit protein eL38
- Chain n
- Large ribosomal subunit protein eL39
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