J3_9SUM_020

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CUC*GAA*UAAAAG

Length

12 nucleotides

Bulged bases

9SUM|1|A|A|2603, 9SUM|1|A|A|2605

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.4

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

12

Unit IDs

9SUM|1|A|C|2564
9SUM|1|A|U|2565
9SUM|1|A|C|2566
*
9SUM|1|A|G|2590
9SUM|1|A|A|2591
9SUM|1|A|A|2592
*
9SUM|1|A|U|2601
9SUM|1|A|A|2602
9SUM|1|A|A|2603
9SUM|1|A|A|2604
9SUM|1|A|A|2605
9SUM|1|A|G|2606

Current chains

Chain A

25S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain G

60S ribosomal protein L5

Chain M

60S ribosomal protein L11-A

Chain V

60S ribosomal protein L21-A