J3_9SUM_025
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 9SUM|1|C|U|60, 9SUM|1|C|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.4
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
9SUM|1|C|A|44
9SUM|1|C|C|45
*
9SUM|1|C|G|58
9SUM|1|C|A|59
9SUM|1|C|U|60
9SUM|1|C|A|61
9SUM|1|C|C|62
9SUM|1|C|G|63
9SUM|1|C|U|64
*
9SUM|1|C|A|92
9SUM|1|C|A|93
9SUM|1|C|U|94
9SUM|1|C|C|95
9SUM|1|C|U|96
Current chains
- Chain C
- 5.8S rRNA
Nearby chains
- Chain Z
- Large ribosomal subunit protein uL23
- Chain j
- 60S ribosomal protein L35
- Chain l
- Ribosomal protein L37
- Chain n
- Large ribosomal subunit protein eL39
Coloring options: