J3_9SUM_032

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|C|1131
9SUM|1|CA|C|1132
9SUM|1|CA|A|1133
9SUM|1|CA|G|1134
*
9SUM|1|CA|C|1556
9SUM|1|CA|U|1557
9SUM|1|CA|A|1558
9SUM|1|CA|G|1559
9SUM|1|CA|U|1560
9SUM|1|CA|A|1561
9SUM|1|CA|A|1562
*
9SUM|1|CA|U|1584
9SUM|1|CA|G|1585
9SUM|1|CA|A|1586
9SUM|1|CA|U|1587
9SUM|1|CA|U|1588
9SUM|1|CA|A|1589
9SUM|1|CA|C|1590
9SUM|1|CA|G|1591

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZH

Small ribosomal subunit protein uS9

Chain ZU

40S ribosomal protein S28-A

Chain x

40S ribosomal protein uS7 (formerly S5)