J3_9SUM_033

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|U|1138
9SUM|1|CA|G|1139
9SUM|1|CA|G|1140
9SUM|1|CA|A|1141
*
9SUM|1|CA|U|1444
9SUM|1|CA|A|1445
9SUM|1|CA|C|1446
*
9SUM|1|CA|G|1549
9SUM|1|CA|G|1550
9SUM|1|CA|A|1551
9SUM|1|CA|A|1552

Current chains

Chain CA

18S rRNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain ZH

Small ribosomal subunit protein uS9

Chain ZJ

40S ribosomal protein S18

Chain ZK

40S ribosomal protein S19-A

Chain x

40S ribosomal protein uS7 (formerly S5)