J3_9SUM_034

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUCAC*GGCCG

Length

25 nucleotides

Bulged bases

9SUM|1|CA|G|1169, 9SUM|1|CA|G|1171, 9SUM|1|CA|A|1173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|C|1150
9SUM|1|CA|U|1151
9SUM|1|CA|U|1152
9SUM|1|CA|A|1153
9SUM|1|CA|A|1154
9SUM|1|CA|U|1155
9SUM|1|CA|U|1156
9SUM|1|CA|U|1157
*
9SUM|1|CA|G|1168
9SUM|1|CA|G|1169
9SUM|1|CA|G|1170
9SUM|1|CA|G|1171
9SUM|1|CA|A|1172
9SUM|1|CA|A|1173
9SUM|1|CA|A|1174
9SUM|1|CA|C|1175
9SUM|1|CA|U|1176
9SUM|1|CA|C|1177
9SUM|1|CA|A|1178
9SUM|1|CA|C|1179
*
9SUM|1|CA|G|1430
9SUM|1|CA|G|1431
9SUM|1|CA|C|1432
9SUM|1|CA|C|1433
9SUM|1|CA|G|1434

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZG

40S ribosomal protein S15

Chain ZJ

40S ribosomal protein S18

Chain ZL

Small ribosomal subunit protein uS10

Chain ZV

Small ribosomal subunit protein uS14