J3_9SUM_040

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

9SUM|1|CA|U|1449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.4

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|C|1446
9SUM|1|CA|A|1447
9SUM|1|CA|C|1448
9SUM|1|CA|U|1449
9SUM|1|CA|G|1450
*
9SUM|1|CA|C|1508
9SUM|1|CA|G|1509
9SUM|1|CA|U|1510
9SUM|1|CA|G|1511
9SUM|1|CA|C|1512
9SUM|1|CA|U|1513
9SUM|1|CA|G|1514
9SUM|1|CA|G|1515
*
9SUM|1|CA|C|1546
9SUM|1|CA|G|1547
9SUM|1|CA|A|1548
9SUM|1|CA|G|1549

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZJ

40S ribosomal protein S18

Chain ZK

40S ribosomal protein S19-A

Chain ZR

40S ribosomal protein S25

Chain x

40S ribosomal protein uS7 (formerly S5)