J3_9SX2_011

3D structure

PDB id

9SX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S Doxycycline Bound E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9SX2|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SX2_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1795

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9SX2|1|A|C|990
9SX2|1|A|U|991
9SX2|1|A|U|992
9SX2|1|A|G|993
9SX2|1|A|A|994
9SX2|1|A|C|995
9SX2|1|A|A|996
9SX2|1|A|U|997
*
9SX2|1|A|A|1044
9SX2|1|A|C|1045
9SX2|1|A|A|1046
9SX2|1|A|G|1047
*
9SX2|1|A|C|1210
9SX2|1|A|U|1211
9SX2|1|A|U|1212
9SX2|1|A|A|1213
9SX2|1|A|C|1214
9SX2|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14