J3_9SX2_013
3D structure
- PDB id
- 9SX2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S Doxycycline Bound E. coli Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.08 Å
Loop
- Sequence
- UG*UGUU*GCAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SX2_013 not in the Motif Atlas
- Homologous match to J3_6CZR_079
- Geometric discrepancy: 0.2107
- The information below is about J3_6CZR_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89145.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9SX2|1|A|U|1073
9SX2|1|A|G|1074
*
9SX2|1|A|U|1083
9SX2|1|A|G|1084
9SX2|1|A|U|1085
9SX2|1|A|U|1086
*
9SX2|1|A|G|1099
9SX2|1|A|C|1100
9SX2|1|A|A|1101
9SX2|1|A|A|1102
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS2
- Chain E
- Small ribosomal subunit protein uS5
- Chain U
- Small ribosomal subunit protein bS21
Coloring options: