J3_9SYH_022

3D structure

PDB id

9SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from deltaRlmE strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9SYH|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SYH_022 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0343

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9SYH|1|a|G|297
9SYH|1|a|G|298
9SYH|1|a|A|299
9SYH|1|a|A|300
9SYH|1|a|G|301
*
9SYH|1|a|C|316
9SYH|1|a|G|317
9SYH|1|a|C|318
9SYH|1|a|G|319
9SYH|1|a|A|320
9SYH|1|a|U|321
9SYH|1|a|A|322
9SYH|1|a|C|323
9SYH|1|a|A|324
9SYH|1|a|G|325
*
9SYH|1|a|C|337
9SYH|1|a|G|338
9SYH|1|a|U|339
9SYH|1|a|A|340
9SYH|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24