J3_9SYR_002
3D structure
- PDB id
- 9SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9SYR|1|L1|U|354, 9SYR|1|L1|A|362, 9SYR|1|L3|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SYR_002 not in the Motif Atlas
- Homologous match to J3_9PN5_004
- Geometric discrepancy: 0.0599
- The information below is about J3_9PN5_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.4
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 12
Unit IDs
9SYR|1|L1|C|351
9SYR|1|L1|G|352
9SYR|1|L1|A|353
9SYR|1|L1|U|354
9SYR|1|L1|A|355
9SYR|1|L1|G|356
9SYR|1|L1|U|357
9SYR|1|L1|C|358
9SYR|1|L1|A|359
9SYR|1|L1|A|360
9SYR|1|L1|C|361
9SYR|1|L1|A|362
9SYR|1|L1|A|363
9SYR|1|L1|G|364
9SYR|1|L1|U|365
9SYR|1|L1|A|366
9SYR|1|L1|C|367
*
9SYR|1|L1|G|374
9SYR|1|L1|G|375
9SYR|1|L1|A|376
9SYR|1|L1|A|377
9SYR|1|L1|A|378
9SYR|1|L1|G|379
*
9SYR|1|L3|C|21
9SYR|1|L3|U|22
9SYR|1|L3|C|23
9SYR|1|L3|G|24
Current chains
- Chain L1
- 28S rRNA
- Chain L3
- 5.8S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein eL37
- Chain LC
- 60S ribosomal protein L39
- Chain LN
- Green fluorescent protein,Small ubiquitin-related modifier 1,Green fluorescent protein,Small ubiquitin-related modifier 1,Histone H4,X-box-binding protein 1,X-box-binding protein 1
- Chain Lc
- 60S ribosomal protein L4
- Chain Lp
- 60S ribosomal protein L26
Coloring options: