J3_9SYR_004

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA

Length

28 nucleotides

Bulged bases

9SYR|1|L1|G|409, 9SYR|1|L1|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|L1|U|380
9SYR|1|L1|U|381
9SYR|1|L1|G|382
9SYR|1|L1|A|383
9SYR|1|L1|A|384
9SYR|1|L1|A|385
9SYR|1|L1|A|386
9SYR|1|L1|G|387
9SYR|1|L1|A|388
9SYR|1|L1|A|389
9SYR|1|L1|C|390
*
9SYR|1|L1|G|401
9SYR|1|L1|A|402
9SYR|1|L1|G|403
9SYR|1|L1|U|404
9SYR|1|L1|U|405
9SYR|1|L1|C|406
9SYR|1|L1|A|407
9SYR|1|L1|A|408
9SYR|1|L1|G|409
9SYR|1|L1|A|410
9SYR|1|L1|G|411
9SYR|1|L1|G|412
9SYR|1|L1|G|413
9SYR|1|L1|C|414
9SYR|1|L1|G|415
*
9SYR|1|L3|C|19
9SYR|1|L3|A|20

Current chains

Chain L1

28S rRNA

Chain L3

5.8S rRNA

Nearby chains

Chain LC

60S ribosomal protein L39

Chain LN

Green fluorescent protein,Small ubiquitin-related modifier 1,Green fluorescent protein,Small ubiquitin-related modifier 1,Histone H4,X-box-binding protein 1,X-box-binding protein 1

Chain Lc

60S ribosomal protein L4

Chain Lg

60S ribosomal protein L17

Chain Lp

60S ribosomal protein L26

Chain Nd

Ubiquitin-like protein SMT3,N-alpha-acetyltransferase 40