J3_9SYR_005

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

9SYR|1|L1|C|704, 9SYR|1|L1|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|L1|C|451
9SYR|1|L1|A|452
9SYR|1|L1|G|453
9SYR|1|L1|U|454
9SYR|1|L1|C|455
*
9SYR|1|L1|G|701
9SYR|1|L1|U|702
9SYR|1|L1|G|703
9SYR|1|L1|C|704
9SYR|1|L1|G|705
*
9SYR|1|L1|C|1292
9SYR|1|L1|G|1293
9SYR|1|L1|A|1294
9SYR|1|L1|C|1295
9SYR|1|L1|G|1296

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Le

Large ribosomal subunit protein eL6

Chain Lv

60S ribosomal protein L32

Chain Lw

60S ribosomal protein L35a