J3_9SYR_006

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UGA(A2M)C(PSU)A*UAG*CGAA

Length

14 nucleotides

Bulged bases

9SYR|1|L1|A2M|1534, 9SYR|1|L1|G|1641, 9SYR|1|L1|A|1642

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|L1|U|1531
9SYR|1|L1|G|1532
9SYR|1|L1|A|1533
9SYR|1|L1|A2M|1534
9SYR|1|L1|C|1535
9SYR|1|L1|PSU|1536
9SYR|1|L1|A|1537
*
9SYR|1|L1|U|1622
9SYR|1|L1|A|1623
9SYR|1|L1|G|1624
*
9SYR|1|L1|C|1640
9SYR|1|L1|G|1641
9SYR|1|L1|A|1642
9SYR|1|L1|A|1643

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein eL37

Chain LC

60S ribosomal protein L39

Chain LH

60S ribosomal protein L15

Chain La

60S ribosomal protein L8