J3_9SYR_017

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

(OMG)UC*GCCUCACGAUCC*(OMG)GUGUC

Length

21 nucleotides

Bulged bases

9SYR|1|L1|U|4374

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|L1|OMG|4228
9SYR|1|L1|U|4229
9SYR|1|L1|C|4230
*
9SYR|1|L1|G|4331
9SYR|1|L1|C|4332
9SYR|1|L1|C|4333
9SYR|1|L1|U|4334
9SYR|1|L1|C|4335
9SYR|1|L1|A|4336
9SYR|1|L1|C|4337
9SYR|1|L1|G|4338
9SYR|1|L1|A|4339
9SYR|1|L1|U|4340
9SYR|1|L1|C|4341
9SYR|1|L1|C|4342
*
9SYR|1|L1|OMG|4370
9SYR|1|L1|G|4371
9SYR|1|L1|U|4372
9SYR|1|L1|G|4373
9SYR|1|L1|U|4374
9SYR|1|L1|C|4375

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L36a

Chain Lh

60S ribosomal protein L18

Chain Lk

60S ribosomal protein L21

Chain Lr

60S ribosomal protein L27a