J3_9SYR_023

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

AG*CGC(A2M)AAUUA*U(A2M)GU

Length

15 nucleotides

Bulged bases

9SYR|1|S1|U|488

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|S1|A|40
9SYR|1|S1|G|41
*
9SYR|1|S1|C|481
9SYR|1|S1|G|482
9SYR|1|S1|C|483
9SYR|1|S1|A2M|484
9SYR|1|S1|A|485
9SYR|1|S1|A|486
9SYR|1|S1|U|487
9SYR|1|S1|U|488
9SYR|1|S1|A|489
*
9SYR|1|S1|U|511
9SYR|1|S1|A2M|512
9SYR|1|S1|G|513
9SYR|1|S1|U|514

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S9

Chain Sg

Small ribosomal subunit protein uS12

Chain Sh

Isoform 3 of Small ribosomal subunit protein eS24

Chain Sw

Small ribosomal subunit protein eS4, X isoform