J3_9SYR_024

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCGGCUUUG*C(PSU)AG

Length

29 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|S1|C|223
9SYR|1|S1|A|224
9SYR|1|S1|G|225
9SYR|1|S1|A|226
9SYR|1|S1|U|227
9SYR|1|S1|C|228
9SYR|1|S1|A|229
9SYR|1|S1|A|230
9SYR|1|S1|A|231
9SYR|1|S1|A|232
9SYR|1|S1|C|233
9SYR|1|S1|C|234
9SYR|1|S1|A|235
9SYR|1|S1|A|236
9SYR|1|S1|C|237
9SYR|1|S1|C|238
*
9SYR|1|S1|G|280
9SYR|1|S1|C|281
9SYR|1|S1|G|282
9SYR|1|S1|G|283
9SYR|1|S1|C|284
9SYR|1|S1|U|285
9SYR|1|S1|U|286
9SYR|1|S1|U|287
9SYR|1|S1|G|288
*
9SYR|1|S1|C|295
9SYR|1|S1|PSU|296
9SYR|1|S1|A|297
9SYR|1|S1|G|298

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein S8

Chain SD

40S ribosomal protein S11

Chain Sw

Small ribosomal subunit protein eS4, X isoform

Chain Sy

40S ribosomal protein S6