J3_9SYR_032

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

9SYR|1|S1|G|1256, 9SYR|1|S1|A|1258, 9SYR|1|S1|A|1260

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|S1|C|1237
9SYR|1|S1|PSU|1238
9SYR|1|S1|U|1239
9SYR|1|S1|A|1240
9SYR|1|S1|A|1241
9SYR|1|S1|U|1242
9SYR|1|S1|U|1243
9SYR|1|S1|PSU|1244
*
9SYR|1|S1|G|1255
9SYR|1|S1|G|1256
9SYR|1|S1|G|1257
9SYR|1|S1|A|1258
9SYR|1|S1|A|1259
9SYR|1|S1|A|1260
9SYR|1|S1|C|1261
9SYR|1|S1|C|1262
9SYR|1|S1|U|1263
9SYR|1|S1|C|1264
9SYR|1|S1|A|1265
9SYR|1|S1|C|1266
*
9SYR|1|S1|G|1516
9SYR|1|S1|G|1517
9SYR|1|S1|C|1518
9SYR|1|S1|U|1519
9SYR|1|S1|G|1520

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Sa

40S ribosomal protein S15

Chain Sd

Small ribosomal subunit protein uS13

Chain Sl

40S ribosomal protein S20

Chain Sp

40S ribosomal protein S29

Chain Sr

Ubiquitin