J3_9SYR_033

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

(OMC)CGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9SYR|1|S1|G|1274, 9SYR|1|S1|G|1507, 9SYR|1|S1|U|1509

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|S1|OMC|1272
9SYR|1|S1|C|1273
9SYR|1|S1|G|1274
9SYR|1|S1|G|1275
9SYR|1|S1|A|1276
9SYR|1|S1|C|1277
*
9SYR|1|S1|G|1320
9SYR|1|S1|G|1321
9SYR|1|S1|G|1322
9SYR|1|S1|U|1323
9SYR|1|S1|G|1324
*
9SYR|1|S1|U|1504
9SYR|1|S1|U|1505
9SYR|1|S1|A|1506
9SYR|1|S1|G|1507
9SYR|1|S1|A|1508
9SYR|1|S1|U|1509
9SYR|1|S1|G|1510

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S10

Chain Sp

40S ribosomal protein S29

Chain Sr

Ubiquitin