J3_9T0Z_002
3D structure
- PDB id
- 9T0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- HPFcold Bound Hibernating C. burnetii 30S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GCUUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 9T0Z|1|A|U|47, 9T0Z|1|A|A|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T0Z_002 not in the Motif Atlas
- Homologous match to J3_6CZR_058
- Geometric discrepancy: 0.1328
- The information below is about J3_6CZR_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.3
- Basepair signature
- cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9T0Z|1|A|G|45
9T0Z|1|A|C|46
9T0Z|1|A|U|47
9T0Z|1|A|U|48
9T0Z|1|A|A|49
9T0Z|1|A|A|50
9T0Z|1|A|C|51
*
9T0Z|1|A|G|356
9T0Z|1|A|G|357
9T0Z|1|A|G|358
9T0Z|1|A|G|359
9T0Z|1|A|A|360
9T0Z|1|A|A|361
9T0Z|1|A|U|362
9T0Z|1|A|A|363
9T0Z|1|A|U|364
*
9T0Z|1|A|A|390
9T0Z|1|A|G|391
9T0Z|1|A|C|392
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
- Chain P
- Small ribosomal subunit protein bS16
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