J3_9T0Z_015
3D structure
- PDB id
- 9T0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- HPFcold Bound Hibernating C. burnetii 30S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- CGU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 9T0Z|1|A|U|1180
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T0Z_015 not in the Motif Atlas
- Geometric match to J3_8B0X_012
- Geometric discrepancy: 0.129
- The information below is about J3_8B0X_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.6
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
9T0Z|1|A|C|1112
9T0Z|1|A|G|1113
9T0Z|1|A|U|1114
*
9T0Z|1|A|A|1152
9T0Z|1|A|G|1153
9T0Z|1|A|A|1154
9T0Z|1|A|C|1155
*
9T0Z|1|A|G|1178
9T0Z|1|A|G|1179
9T0Z|1|A|U|1180
9T0Z|1|A|G|1181
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14
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