J3_9T4R_002
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCCUAAU*AGGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 9T4R|1|A|C|49, 9T4R|1|A|A|51, 9T4R|1|A|A|52
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T4R_002 not in the Motif Atlas
- Homologous match to J3_6CZR_058
- Geometric discrepancy: 0.1361
- The information below is about J3_6CZR_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.3
- Basepair signature
- cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9T4R|1|A|G|47
9T4R|1|A|C|48
9T4R|1|A|C|49
9T4R|1|A|U|50
9T4R|1|A|A|51
9T4R|1|A|A|52
9T4R|1|A|U|53
*
9T4R|1|A|A|367
9T4R|1|A|G|368
9T4R|1|A|G|369
9T4R|1|A|G|370
9T4R|1|A|A|371
9T4R|1|A|A|372
9T4R|1|A|U|373
9T4R|1|A|C|374
9T4R|1|A|U|375
*
9T4R|1|A|A|401
9T4R|1|A|G|402
9T4R|1|A|C|403
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
- Chain P
- Small ribosomal subunit protein bS16
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