J3_9T4R_011

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUUGACAUCCU*AAGUGACAG*CUUAUG

Length

26 nucleotides

Bulged bases

9T4R|1|A|A|1055, 9T4R|1|A|U|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T4R|1|A|C|999
9T4R|1|A|U|1000
9T4R|1|A|U|1001
9T4R|1|A|G|1002
9T4R|1|A|A|1003
9T4R|1|A|C|1004
9T4R|1|A|A|1005
9T4R|1|A|U|1006
9T4R|1|A|C|1007
9T4R|1|A|C|1008
9T4R|1|A|U|1009
*
9T4R|1|A|A|1050
9T4R|1|A|A|1051
9T4R|1|A|G|1052
9T4R|1|A|U|1053
9T4R|1|A|G|1054
9T4R|1|A|A|1055
9T4R|1|A|C|1056
9T4R|1|A|A|1057
9T4R|1|A|G|1058
*
9T4R|1|A|C|1220
9T4R|1|A|U|1221
9T4R|1|A|U|1222
9T4R|1|A|A|1223
9T4R|1|A|U|1224
9T4R|1|A|G|1225

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14B