J3_9T4R_021
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- ACGUUACUAACG*UGC*GAUUU
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T4R_021 not in the Motif Atlas
- Geometric match to J3_4WF9_001
- Geometric discrepancy: 0.1082
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
9T4R|1|a|A|56
9T4R|1|a|C|57
9T4R|1|a|G|58
9T4R|1|a|U|59
9T4R|1|a|U|60
9T4R|1|a|A|61
9T4R|1|a|C|62
9T4R|1|a|U|63
9T4R|1|a|A|64
9T4R|1|a|A|65
9T4R|1|a|C|66
9T4R|1|a|G|67
*
9T4R|1|a|U|74
9T4R|1|a|G|75
9T4R|1|a|C|76
*
9T4R|1|a|G|109
9T4R|1|a|A|110
9T4R|1|a|U|111
9T4R|1|a|U|112
9T4R|1|a|U|113
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain s
- Large ribosomal subunit protein uL23
- Chain x
- Large ribosomal subunit protein uL29
Coloring options: