J3_9T4R_034

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CA*UAUAAG*CGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9T4R_034 not in the Motif Atlas

Geometric match to J3_9DFE_018

Geometric discrepancy: 0.3685

The information below is about J3_9DFE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

9T4R|1|a|C|2814
9T4R|1|a|A|2815
*
9T4R|1|a|U|2824
9T4R|1|a|A|2825
9T4R|1|a|U|2826
9T4R|1|a|A|2827
9T4R|1|a|A|2828
9T4R|1|a|G|2829
*
9T4R|1|a|C|2907
9T4R|1|a|G|2908
9T4R|1|a|A|2909
9T4R|1|a|A|2910
9T4R|1|a|G|2911

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3