J3_9T4R_036

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUAUAG*CGU*AACG

Length

13 nucleotides

Bulged bases

9T4R|1|b|U|10, 9T4R|1|b|U|12, 9T4R|1|b|C|105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T4R|1|b|C|9
9T4R|1|b|U|10
9T4R|1|b|A|11
9T4R|1|b|U|12
9T4R|1|b|A|13
9T4R|1|b|G|14
*
9T4R|1|b|C|66
9T4R|1|b|G|67
9T4R|1|b|U|68
*
9T4R|1|b|A|103
9T4R|1|b|A|104
9T4R|1|b|C|105
9T4R|1|b|G|106

Current chains

Chain b

5S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain v

Large ribosomal subunit protein bL27