J3_9T61_007
3D structure
- PDB id
- 9T61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound C. burnetii 30S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T61_007 not in the Motif Atlas
- Homologous match to J3_6CZR_061
- Geometric discrepancy: 0.1128
- The information below is about J3_6CZR_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.3
- Basepair signature
- cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9T61|1|A|C|932
9T61|1|A|A|933
9T61|1|A|A|934
9T61|1|A|G|935
*
9T61|1|A|C|1341
9T61|1|A|U|1342
9T61|1|A|A|1343
9T61|1|A|G|1344
9T61|1|A|U|1345
9T61|1|A|A|1346
9T61|1|A|A|1347
*
9T61|1|A|U|1369
9T61|1|A|G|1370
9T61|1|A|A|1371
9T61|1|A|A|1372
9T61|1|A|U|1373
9T61|1|A|A|1374
9T61|1|A|C|1375
9T61|1|A|G|1376
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
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