J3_9T61_014

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UG*UGUU*GUAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9T61_014 not in the Motif Atlas

Homologous match to J3_6CZR_079

Geometric discrepancy: 0.1915

The information below is about J3_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89145.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9T61|1|A|U|1069
9T61|1|A|G|1070
*
9T61|1|A|U|1079
9T61|1|A|G|1080
9T61|1|A|U|1081
9T61|1|A|U|1082
*
9T61|1|A|G|1095
9T61|1|A|U|1096
9T61|1|A|A|1097
9T61|1|A|A|1098

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5