J3_9TEW_007

3D structure

PDB id

9TEW (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDro bound to the initiating Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TEW_007 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1079

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9TEW|1|A|C|936
9TEW|1|A|A|937
9TEW|1|A|A|938
9TEW|1|A|G|939
*
9TEW|1|A|C|1344
9TEW|1|A|U|1345
9TEW|1|A|A|1346
9TEW|1|A|G|1347
9TEW|1|A|U|1348
9TEW|1|A|A|1349
9TEW|1|A|A|1350
*
9TEW|1|A|U|1372
9TEW|1|A|G|1373
9TEW|1|A|A|1374
9TEW|1|A|A|1375
9TEW|1|A|U|1376
9TEW|1|A|A|1377
9TEW|1|A|C|1378
9TEW|1|A|G|1379

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

Small ribosomal subunit protein uS9