J3_9TEW_011

3D structure

PDB id

9TEW (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDro bound to the initiating Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9TEW|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TEW_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1821

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9TEW|1|A|C|990
9TEW|1|A|U|991
9TEW|1|A|U|992
9TEW|1|A|G|993
9TEW|1|A|A|994
9TEW|1|A|C|995
9TEW|1|A|A|996
9TEW|1|A|U|997
*
9TEW|1|A|A|1044
9TEW|1|A|C|1045
9TEW|1|A|A|1046
9TEW|1|A|G|1047
*
9TEW|1|A|C|1210
9TEW|1|A|U|1211
9TEW|1|A|U|1212
9TEW|1|A|A|1213
9TEW|1|A|C|1214
9TEW|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14