J3_9TEW_022

3D structure

PDB id

9TEW (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDro bound to the initiating Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9TEW|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TEW_022 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0389

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9TEW|1|a|G|297
9TEW|1|a|G|298
9TEW|1|a|A|299
9TEW|1|a|A|300
9TEW|1|a|G|301
*
9TEW|1|a|C|316
9TEW|1|a|G|317
9TEW|1|a|C|318
9TEW|1|a|G|319
9TEW|1|a|A|320
9TEW|1|a|U|321
9TEW|1|a|A|322
9TEW|1|a|C|323
9TEW|1|a|A|324
9TEW|1|a|G|325
*
9TEW|1|a|C|337
9TEW|1|a|G|338
9TEW|1|a|U|339
9TEW|1|a|A|340
9TEW|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24