J3_9TEX_011

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9TEX|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TEX_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.182

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9TEX|1|A|C|990
9TEX|1|A|U|991
9TEX|1|A|U|992
9TEX|1|A|G|993
9TEX|1|A|A|994
9TEX|1|A|C|995
9TEX|1|A|A|996
9TEX|1|A|U|997
*
9TEX|1|A|A|1044
9TEX|1|A|C|1045
9TEX|1|A|A|1046
9TEX|1|A|G|1047
*
9TEX|1|A|C|1210
9TEX|1|A|U|1211
9TEX|1|A|U|1212
9TEX|1|A|A|1213
9TEX|1|A|C|1214
9TEX|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14