J3_9TEX_024

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TEX_024 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1101

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

9TEX|1|a|C|698
9TEX|1|a|A|699
9TEX|1|a|G|700
*
9TEX|1|a|C|732
9TEX|1|a|G|733
9TEX|1|a|A|734
9TEX|1|a|A|735
9TEX|1|a|C|736
*
9TEX|1|a|G|760
9TEX|1|a|A|761
9TEX|1|a|U|762
9TEX|1|a|G|763

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2