J3_9TI5_005

3D structure

PDB id

9TI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the SSU (postTC-RRF-SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

9TI5|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI5_005 not in the Motif Atlas

Homologous match to J3_7A0S_003

Geometric discrepancy: 0.1752

The information below is about J3_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9TI5|1|A|C|272
9TI5|1|A|A|273
9TI5|1|A|A|274
9TI5|1|A|A|275
9TI5|1|A|C|276
*
9TI5|1|A|G|295
9TI5|1|A|G|296
9TI5|1|A|G|297
9TI5|1|A|U|298
9TI5|1|A|U|299
9TI5|1|A|G|300
9TI5|1|A|U|301
9TI5|1|A|A|302
*
9TI5|1|A|U|415
9TI5|1|A|G|416

Current chains

Chain A

23S rRNA

Nearby chains