J3_9TI5_012

3D structure

PDB id

9TI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the SSU (postTC-RRF-SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI5_012 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.0896

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9TI5|1|A|G|1468
9TI5|1|A|G|1469
9TI5|1|A|G|1470
9TI5|1|A|A|1471
9TI5|1|A|C|1472
9TI5|1|A|G|1473
*
9TI5|1|A|C|1611
9TI5|1|A|C|1612
*
9TI5|1|A|G|1615
9TI5|1|A|A|1616
9TI5|1|A|A|1617
9TI5|1|A|A|1618
9TI5|1|A|A|1619
9TI5|1|A|G|1620
9TI5|1|A|C|1621

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2