J3_9TI6_005

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

9TI6|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI6_005 not in the Motif Atlas

Homologous match to J3_7A0S_003

Geometric discrepancy: 0.1756

The information below is about J3_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9TI6|1|A|C|272
9TI6|1|A|A|273
9TI6|1|A|A|274
9TI6|1|A|A|275
9TI6|1|A|C|276
*
9TI6|1|A|G|295
9TI6|1|A|G|296
9TI6|1|A|G|297
9TI6|1|A|U|298
9TI6|1|A|U|299
9TI6|1|A|G|300
9TI6|1|A|U|301
9TI6|1|A|A|302
*
9TI6|1|A|U|415
9TI6|1|A|G|416

Current chains

Chain A

23S rRNA

Nearby chains