J3_9TI6_010

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

9TI6|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI6_010 not in the Motif Atlas

Geometric match to J3_4WF9_005

Geometric discrepancy: 0.0809

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

9TI6|1|A|C|1342
9TI6|1|A|U|1343
9TI6|1|A|A|1344
9TI6|1|A|A|1345
9TI6|1|A|G|1346
*
9TI6|1|A|C|1649
9TI6|1|A|G|1650
9TI6|1|A|C|1651
9TI6|1|A|A|1652
9TI6|1|A|A|1653
9TI6|1|A|A|1654
9TI6|1|A|C|1655
*
9TI6|1|A|G|1664
9TI6|1|A|U|1665
9TI6|1|A|A|1666
9TI6|1|A|G|1667

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34